Information for 18-ACACACAATA (Motif 19)


Reverse Opposite:

p-value:1e-2
log p-value:-5.248e+00
Information Content per bp:1.922
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif188.2
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets266.4 +/- 159.8bp
Average Position of motif in Background223.6 +/- 228.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ACACACAATA----
CTCACACAATGGCGC

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ACACACAATA--
CGAAGCACACAAAATA

MA0078.1_Sox17/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:ACACACAATA--
---GACAATGNN

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACACACAATA----
TCACGGAACAATAGGTG

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ACACACAATA-
ATTTGCATACAATGG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACACACAATA-
-RNAACAATGG

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACACACAATA
GTAAACAAT-

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:ACACACAATA
---AACAAT-

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACACACAATA--------
AATAAAGAACAATAGAATTTCA

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACACACAATA
--NAACAAT-