Information for 4-TRGATAGATAGA (Motif 4)


Reverse Opposite:

p-value:1e-5
log p-value:-1.185e+01
Information Content per bp:1.655
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif42.86%
Number of Background Sequences with motif2631.8
Percentage of Background Sequences with motif7.24%
Average Position of motif in Targets310.2 +/- 121.7bp
Average Position of motif in Background251.5 +/- 197.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TRGATAGATAGA
-DGATCRATAN-

MA0070.1_PBX1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TRGATAGATAGA
TTTGATTGATGN-

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TRGATAGATAGA----
-AGATGKDGAGATAAG

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TRGATAGATAGA
-TGATTGATGA-

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TRGATAGATAGA--
ANNNGGATATATCCNNN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TRGATAGATAGA
ATGATKGATGRC

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TRGATAGATAGA
--TATACATA--

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TRGATAGATAGA--
TGTATATATATACC

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TRGATAGATAGA
NNNNNATTGATGNGTGN-

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TRGATAGATAGA-
-----AGATAASR