Information for 5-GGCTGGGCACCT (Motif 6)


Reverse Opposite:

p-value:1e-3
log p-value:-8.162e+00
Information Content per bp:1.885
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif52.38%
Number of Background Sequences with motif6347.9
Percentage of Background Sequences with motif17.45%
Average Position of motif in Targets267.0 +/- 154.5bp
Average Position of motif in Background253.6 +/- 182.9bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)2.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGGGCACCT--
NNNNTTGGGCACNNCN

PB0167.1_Sox13_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGCTGGGCACCT
GTATTGGGTGGGTAATT

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTGGGCACCT
NGCTN-------

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGGCACCT
TWGTCTGV------

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCTGGGCACCT
GGGGGCGGGGCC---

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------GGCTGGGCACCT
GGGNGGGGGCGGGGC----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGGCACCT
CTGTCTGG------

MA0079.3_SP1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGCTGGGCACCT
GGGGGCGGGGC----

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGGGCACCT---
NNGTATGTGCACATNNN

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGGGCACCT
ATGCCCGGGCATGT