Information for 6-AAGTGTCGAC (Motif 7)


Reverse Opposite:

p-value:1e-3
log p-value:-7.457e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets477.0 +/- 0.0bp
Average Position of motif in Background325.6 +/- 106.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AAGTGTCGAC--
GCGGAGGTGTCGCCTC

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGTGTCGAC
TTAAGTGGA---

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGTGTCGAC
AGGTGTCA--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AAGTGTCGAC
CTYRAGTGSY---

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGTGTCGAC
AGGTGTGAAM

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGTGTCGAC---
-GGTGYTGACAGS

PB0036.1_Irf6_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AAGTGTCGAC---
NNNTTGGTTTCGNTNNN

PB0035.1_Irf5_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAGTGTCGAC----
NTGGTTTCGGTTNNN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGTCGAC
TTGAGTGSTT--

PB0034.1_Irf4_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGTCGAC---
TNTGGTTTCGATACN