Information for 6-ACACACGCGCAC (Motif 9)


Reverse Opposite:

p-value:1e-3
log p-value:-7.300e+00
Information Content per bp:1.910
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif66.2
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets239.0 +/- 35.0bp
Average Position of motif in Background197.2 +/- 313.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACACACGCGCAC
AGCGGCACACACGCAA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ACACACGCGCAC
---CACGCA---

MA0464.1_Bhlhe40/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACACACGCGCAC
-CTCACGTGCAC

MA0472.1_EGR2/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACACACGCGCAC
CCCCCGCCCACGCAC

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACACACGCGCAC
-CRCCCACGCA-

PB0151.1_Myf6_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ACACACGCGCAC
AGCAACAGCCGCACC-

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ACACACGCGCAC---
---YCCGCCCACGCN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACACACGCGCAC
TBGCACGCAA--

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ACACACGCGCAC
--GCACGTNC--

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACACACGCGCAC
GGCCACACCCAN--