Information for 1-ATCGAATGGAAT (Motif 1)


Reverse Opposite:

p-value:1e-28
log p-value:-6.550e+01
Information Content per bp:1.508
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets215.0 +/- 120.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)4.73
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0169.1_Sox15_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATCGAATGGAAT----
-TTGAATGAAATTCGA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATCGAATGGAAT--
----NCTGGAATGC

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:ATCGAATGGAAT---
---AGATGCAATCCC

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ATCGAATGGAAT--
----AATGGAAAAT

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATCGAATGGAAT-
TATTATGGGATGGATAA

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATCGAATGGAAT
NNNTATTGAATTGNNN

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:ATCGAATGGAAT--
----CCWGGAATGY

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATCGAATGGAAT--
--YTAATYNRATTA

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.53
Offset:-8
Orientation:forward strand
Alignment:--------ATCGAATGGAAT
NTNATGCAAYMNNHTGMAAY

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATCGAATGGAAT--
ACTATGAATGAATGAT