Information for 9-GTCCCAGC (Motif 12)


Reverse Opposite:

p-value:1e-7
log p-value:-1.636e+01
Information Content per bp:1.954
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif18.31%
Number of Background Sequences with motif5446.9
Percentage of Background Sequences with motif11.15%
Average Position of motif in Targets205.7 +/- 121.1bp
Average Position of motif in Background213.7 +/- 124.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GTCCCAGC
HTTTCCCASG

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCCCAGC-----
ATTTCCCAGVAKSCY

PB0114.1_Egr1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTCCCAGC-----
NNAGTCCCACTCNNNN

POL011.1_XCPE1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCCCAGC-
GGTCCCGCCC

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTCCCAGC-----
ACTATGCCAACCTACC

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCCCAGC------
CCACACAGCAGGAGA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTCCCAGC
CTGTTCCTGG

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GTCCCAGC-
----CAGCC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCCCAGC
-TCCCCA-

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCCCAGC------
CCACACAGCAGGAGA