Information for 10-GACGGAGT (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.620e+01
Information Content per bp:1.899
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif10.67%
Number of Background Sequences with motif2611.8
Percentage of Background Sequences with motif5.34%
Average Position of motif in Targets215.3 +/- 99.4bp
Average Position of motif in Background215.6 +/- 127.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GACGGAGT------
NTNNNAGGAGTCTCNTN

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GACGGAGT
--CGGAGC

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GACGGAGT-
AGAGGAAGTG

PB0131.1_Gmeb1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GACGGAGT---
TGGGCGACGTCGTTAA

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.56
Offset:-9
Orientation:reverse strand
Alignment:---------GACGGAGT
NNTTTANNCGACGNA--

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GACGGAGT-------
NNAAGGGATTAACGANT

PH0126.1_Obox6/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GACGGAGT----
AAAAACGGATTATTG

MA0028.1_ELK1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACGGAGT
GAGCCGGAAG

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GACGGAGT------
TGAACCGGATTAATGAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GACGGAGT---
--TTAAGTGGA