Information for 15-AGVACATA (Motif 16)


Reverse Opposite:

p-value:1e-5
log p-value:-1.299e+01
Information Content per bp:1.847
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif19.27%
Number of Background Sequences with motif6219.8
Percentage of Background Sequences with motif12.73%
Average Position of motif in Targets232.7 +/- 119.8bp
Average Position of motif in Background210.3 +/- 124.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGVACATA-----
CGAAGCACACAAAATA

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGVACATA
TATACATA

PB0096.1_Zfp187_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AGVACATA-
TTATTAGTACATAN

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGVACATA
NACAGGAAAT-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGVACATA--
AAGGATATNTN

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGVACATA------
AAGAACAGAATGTTC

MA0482.1_Gata4/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGVACATA---
NNGAGATAAGA

MA0136.1_ELF5/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGVACATA
AAGGAAGTA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGVACATA
CCAGGAACAG-

MA0058.2_MAX/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGVACATA-
AAGCACATGG