Information for 17-CACACACAAAKA (Motif 17)


Reverse Opposite:

p-value:1e-5
log p-value:-1.249e+01
Information Content per bp:1.873
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.66%
Number of Background Sequences with motif587.4
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets210.5 +/- 103.2bp
Average Position of motif in Background211.6 +/- 147.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CACACACAAAKA
AGCGGCACACACGCAA-

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CACACACAAAKA---
AAACAGACAAAGGAAT

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACACACAAAKA
CGAAGCACACAAAATA-

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CACACACAAAKA
GCCACACCCA----

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CACACACAAAKA---
---AAACAAACANNC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACACACAAAKA
GGCCACACCCAN---

MA0493.1_Klf1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CACACACAAAKA
GGCCACACCCA----

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACACACAAAKA
CRCCCACGCA--

MA0472.1_EGR2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACACACAAAKA
CCCCCGCCCACGCAC-

MA0511.1_RUNX2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CACACACAAAKA
CAAACCACAAACCCC--