Information for 19-CTCTCTTTCT (Motif 18)


Reverse Opposite:

p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.675
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif16.56%
Number of Background Sequences with motif5257.4
Percentage of Background Sequences with motif10.76%
Average Position of motif in Targets210.5 +/- 111.5bp
Average Position of motif in Background214.7 +/- 127.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTCTCTTTCT-
NNAATTCTCGNTNAN

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCTCTTTCT-
ACTTTCACTTTC

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTCTCTTTCT-
ACCACTCTCGGTCAC

MA0508.1_PRDM1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCTTTCT--
TCACTTTCACTTTCN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCTCTTTCT---
-KCTATTTTTRGH

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTCTCTTTCT
ACTTTCACTTTC-

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTCTTTCT------
NAGTTTCABTHTGACTNW

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTCTCTTTCT
AGTTTCAGTTTC-

MA0497.1_MEF2C/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCTCTTTCT-----
TTCTATTTTTAGNNN

MA0052.2_MEF2A/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTTTCT----
NNGCTATTTTTAGCN