Information for 10-TGGGTTCAYGCC (Motif 2)


Reverse Opposite:

p-value:1e-14
log p-value:-3.380e+01
Information Content per bp:1.748
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif9.08%
Number of Background Sequences with motif1294.5
Percentage of Background Sequences with motif2.65%
Average Position of motif in Targets207.4 +/- 123.2bp
Average Position of motif in Background215.9 +/- 127.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TGGGTTCAYGCC-
NTNNNGGGGTCANGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGGGTTCAYGCC-
GGCGAGGGGTCAAGGGC

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGGGTTCAYGCC
AGAGCGGGGTCAAGTA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGGGTTCAYGCC-
CTCCAGGGGTCAATTGA

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGGGTTCAYGCC
CGCGCCGGGTCACGTA

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGGTTCAYGCC-----
NNTTTTCACACCTTNNN

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGGGTTCAYGCC
TGGTTTCAGT--

MA0074.1_RXRA::VDR/Jaspar

Match Rank:8
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------TGGGTTCAYGCC
GGGTCAACGAGTTCA----

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGGGTTCAYGCC
--AGGTCA----

MA0009.1_T/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGGGTTCAYGCC---
----TTCACACCTAG