Information for 20-AACCCTAA (Motif 20)


Reverse Opposite:

p-value:1e-2
log p-value:-5.684e+00
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif467.0
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets260.1 +/- 98.8bp
Average Position of motif in Background209.5 +/- 117.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AACCCTAA
AACCGANA

PB0046.1_Mybl1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACCCTAA----
TTGAAAACCGTTAATTT

PB0045.1_Myb_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACCCTAA----
ATGGAAACCGTTATTTT

MA0111.1_Spz1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AACCCTAA
GCTGTTACCCT--

MA0133.1_BRCA1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACCCTAA
ACAACAC---

MA0132.1_Pdx1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AACCCTAA--
----CTAATT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AACCCTAA-
AAACCACANN

MA0057.1_MZF1_5-13/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AACCCTAA
TTCCCCCTAC

PH0094.1_Lhx4/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AACCCTAA--------
CAAAGCTAATTAGNTTN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AACCCTAA
NAAACCACAG