Information for 9-CTGCAAGCTC (Motif 3)


Reverse Opposite:

p-value:1e-14
log p-value:-3.378e+01
Information Content per bp:1.918
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif10.67%
Number of Background Sequences with motif1718.2
Percentage of Background Sequences with motif3.52%
Average Position of motif in Targets205.7 +/- 117.9bp
Average Position of motif in Background217.2 +/- 126.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0014.1_Esrra_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAGCTC------
TATTCAAGGTCATGCGA

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTGCAAGCTC
---CAAGCTT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCAAGCTC
AGATGCAATCCC

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGCAAGCTC-
-NTCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGCAAGCTC-
-BTCAAGGTCA

MA0141.2_Esrrb/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGCAAGCTC-
AGCTCAAGGTCA

MA0592.1_ESRRA/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGCAAGCTC---
--CCAAGGTCACA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCAAGCTC--
--TCAAGGTCAN

MA0505.1_Nr5a2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGCAAGCTC---
AAGTTCAAGGTCAGC

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CTGCAAGCTC
AATCGCACTGCATTCCG