Information for 4-GWTCGCGC (Motif 6)


Reverse Opposite:

p-value:1e-9
log p-value:-2.132e+01
Information Content per bp:1.716
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif13.06%
Number of Background Sequences with motif3082.8
Percentage of Background Sequences with motif6.31%
Average Position of motif in Targets218.2 +/- 114.7bp
Average Position of motif in Background212.6 +/- 126.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0024.2_E2F1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GWTCGCGC---
CCTCCCGCCCN

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GWTCGCGC-
NYTTCCCGCC

MA0470.1_E2F4/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GWTCGCGC--
NNTTCCCGCCC

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GWTCGCGC--
VDTTTCCCGCCA

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GWTCGCGC-
DTTTCCCGCC

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GWTCGCGC---
-TTCCCGCCWG

MA0471.1_E2F6/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GWTCGCGC--
NCTTCCCGCCC

MA0469.1_E2F3/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GWTCGCGC--------
-CTCCCGCCCCCACTC

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GWTCGCGC--
GGTCCCGCCC

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GWTCGCGC---
TTTTCGCGCGAA