| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.626e+00 | 0.3500 | 23.0 | 3.66% | 880.2 | 1.80% | motif file (matrix) | |
| 2 | | bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -6.455e+00 | 0.3500 | 91.0 | 14.49% | 5193.5 | 10.63% | motif file (matrix) | |
| 3 | | Sp1(Zf)/Promoter/Homer | 1e-2 | -6.227e+00 | 0.3500 | 34.0 | 5.41% | 1542.8 | 3.16% | motif file (matrix) | |
| 4 | | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-2 | -4.958e+00 | 0.4636 | 266.0 | 42.36% | 18327.7 | 37.50% | motif file (matrix) |