Information for 11-CTGACAATGC (Motif 11)


Reverse Opposite:

p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.874
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif174.2
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets216.0 +/- 108.8bp
Average Position of motif in Background197.0 +/- 119.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CTGACAATGC-
--GACAATGNN

PH0140.1_Pknox1/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AAAGACCTGTCAATCC

PH0105.1_Meis3/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AATTACCTGTCAATAC

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AACGAGCTGTCAATAC

PH0170.1_Tgif2/Jaspar

Match Rank:5
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AACTAGCTGTCAATAC

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AAGCACCTGTCAATAT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGACAATGC
VGCTGWCAVB--

PH0104.1_Meis2/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CTGACAATGC
AAAGACCTGTCAATAC

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGACAATGC
VRRACAAWGG

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CTGACAATGC-
NNNCAGCTGTCAATATN