Information for 19-TGAAATGATGAA (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.944e+01
Information Content per bp:1.877
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif121.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets145.2 +/- 102.2bp
Average Position of motif in Background200.7 +/- 121.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGAAATGATGAA--
----ATGATGCAAT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TGAAATGATGAA--
----MTGATGCAAT

PB0176.1_Sox5_2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGAAATGATGAA-
NNCTNAATTATGANN

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGAAATGATGAA-
AAGGCGAAATCATCGCA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGAAATGATGAA----
----ATGATKGATGRC

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGAAATGATGAA---
NNNNNATTGATGNGTGN

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGAAATGATGAA---
AAAWWTGCTGACWWD

PH0020.1_Dlx1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAAATGATGAA-
CTGAGGTAATTAAT

MA0046.1_HNF1A/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGAAATGATGAA--
GNTAATNATTAACC

PH0019.1_Dbx2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGAAATGATGAA---
TTTAATTAATTAATTC