Information for 4-TCGGGTAC (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.617e+01
Information Content per bp:1.839
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif570.2
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets230.1 +/- 112.8bp
Average Position of motif in Background196.0 +/- 115.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0156.1_Plagl1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TCGGGTAC-----
GCTGGGGGGTACCCCTT

PB0094.1_Zfp128_1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCGGGTAC--------
TTNGGGTACGCCNNANN

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TCGGGTAC----
NNNNTTGGGCACNNCN

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCGGGTAC------
ACTCCAAGTACTTGGAA

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCGGGTAC
CWGGCGGGAA-

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TCGGGTAC--
NNNNATGCGGGTNNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCGGGTAC--
CCAGGAACAG

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCGGGTAC--
TGGCGGGAAAHB

MA0032.1_FOXC1/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TCGGGTAC-----
-----TACTNNNN

MA0470.1_E2F4/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCGGGTAC-
GGGCGGGAAGG