Information for 11-MCTATCST (Motif 20)


Reverse Opposite:

p-value:1e-3
log p-value:-8.382e+00
Information Content per bp:1.856
Number of Target Sequences with motif123.0
Percentage of Target Sequences with motif6.79%
Number of Background Sequences with motif2344.7
Percentage of Background Sequences with motif4.90%
Average Position of motif in Targets215.0 +/- 113.1bp
Average Position of motif in Background200.4 +/- 115.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--MCTATCST-
AAGATATCCTT

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--MCTATCST-
NNACTTACCTN

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:MCTATCST----
ACTTTCGTTTCT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--MCTATCST-
NNACTTGCCTT

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----MCTATCST----
TNNTGCTACTGTNNNN

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----MCTATCST----
CNNNGCTACTGTANNN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:MCTATCST---
-CTATTTTTGG

MA0077.1_SOX9/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:MCTATCST--
-CCATTGTTC

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---MCTATCST-----
GATAACATCCTAGTAG

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-MCTATCST
YSTTATCT-