Information for 14-CGTATGGR (Motif 21)


Reverse Opposite:

p-value:1e-3
log p-value:-7.435e+00
Information Content per bp:1.860
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif5.46%
Number of Background Sequences with motif1861.1
Percentage of Background Sequences with motif3.89%
Average Position of motif in Targets198.9 +/- 119.9bp
Average Position of motif in Background202.4 +/- 119.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CGTATGGR
VBSYGTCTGG-

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CGTATGGR----
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGTATGGR
CTGTCTGG-

PB0106.1_Arid5a_2/Jaspar

Match Rank:4
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CGTATGGR---
TNNTTTCGTATTNNANN

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGTATGGR
GGTAAGTA----

MA0057.1_MZF1_5-13/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGTATGGR---
-GGAGGGGGAA

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGTATGGR--
--TATGTNTA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGTATGGR--
GGTCTGGCAT

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTATGGR--------
TATTATGGGATGGATAA

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTATGGR
TWGTCTGV-