Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1812)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47886)	% of Background Sequences with Motif
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-5.473e+00	1.0000	349.0	19.26%	8083.1	16.88%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-5.052e+00	1.0000	655.0	36.15%	15970.4	33.35%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.564e+00	1.0000	25.0	1.38%	396.0	0.83%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.555e+00	1.0000	593.0	32.73%	14460.1	30.19%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.260e+00	1.0000	479.0	26.43%	11581.4	24.18%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.162e+00	1.0000	312.0	17.22%	7348.6	15.34%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.113e+00	1.0000	313.0	17.27%	7381.2	15.41%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.986e+00	1.0000	126.0	6.95%	2758.9	5.76%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.786e+00	1.0000	79.0	4.36%	1652.2	3.45%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.260e+00	1.0000	313.0	17.27%	7528.4	15.72%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.165e+00	1.0000	406.0	22.41%	9925.4	20.73%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.145e+00	1.0000	125.0	6.90%	2828.1	5.91%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.063e+00	1.0000	69.0	3.81%	1477.1	3.08%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.983e+00	1.0000	813.0	44.87%	20560.9	42.93%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.973e+00	1.0000	595.0	32.84%	14859.3	31.03%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.917e+00	1.0000	224.0	12.36%	5333.4	11.14%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.723e+00	1.0000	328.0	18.10%	8018.3	16.74%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.546e+00	1.0000	32.0	1.77%	645.1	1.35%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.456e+00	1.0000	797.0	43.98%	20290.8	42.37%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.300e+00	1.0000	26.0	1.43%	522.9	1.09%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.290e+00	1.0000	67.0	3.70%	1505.3	3.14%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.234e+00	1.0000	166.0	9.16%	3986.7	8.32%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.215e+00	1.0000	268.0	14.79%	6591.7	13.76%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.184e+00	1.0000	45.0	2.48%	981.7	2.05%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.164e+00	1.0000	180.0	9.93%	4355.0	9.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.163e+00	1.0000	1076.0	59.38%	27758.6	57.96%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.162e+00	1.0000	524.0	28.92%	13231.8	27.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.134e+00	1.0000	125.0	6.90%	2968.2	6.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.114e+00	1.0000	19.0	1.05%	372.6	0.78%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.081e+00	1.0000	8.0	0.44%	131.0	0.27%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.009e+00	1.0000	368.0	20.31%	9221.4	19.26%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.988e+00	1.0000	279.0	15.40%	6927.9	14.47%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.930e+00	1.0000	214.0	11.81%	5270.7	11.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.907e+00	1.0000	3.0	0.17%	35.2	0.07%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.853e+00	1.0000	93.0	5.13%	2207.2	4.61%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.843e+00	1.0000	1034.0	57.06%	26755.6	55.87%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.827e+00	1.0000	604.0	33.33%	15429.6	32.22%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.819e+00	1.0000	55.0	3.04%	1263.4	2.64%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.799e+00	1.0000	216.0	11.92%	5351.4	11.17%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.785e+00	1.0000	33.0	1.82%	727.5	1.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.746e+00	1.0000	1282.0	70.75%	33384.0	69.71%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.739e+00	1.0000	28.0	1.55%	610.2	1.27%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.674e+00	1.0000	490.0	27.04%	12499.1	26.10%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.673e+00	1.0000	416.0	22.96%	10568.2	22.07%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.669e+00	1.0000	1004.0	55.41%	26026.2	54.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.597e+00	1.0000	32.0	1.77%	720.6	1.50%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.524e+00	1.0000	4.0	0.22%	63.3	0.13%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.507e+00	1.0000	90.0	4.97%	2187.1	4.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.403e+00	1.0000	711.0	39.24%	18402.8	38.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.401e+00	1.0000	585.0	32.28%	15091.0	31.51%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.400e+00	1.0000	78.0	4.30%	1900.4	3.97%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.379e+00	1.0000	14.0	0.77%	300.6	0.63%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.353e+00	1.0000	327.0	18.05%	8354.9	17.45%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.345e+00	1.0000	213.0	11.75%	5390.9	11.26%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.343e+00	1.0000	335.0	18.49%	8566.5	17.89%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.249e+00	1.0000	277.0	15.29%	7085.8	14.80%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.232e+00	1.0000	210.0	11.59%	5345.6	11.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.212e+00	1.0000	388.0	21.41%	10000.8	20.88%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.205e+00	1.0000	69.0	3.81%	1704.2	3.56%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.193e+00	1.0000	38.0	2.10%	915.0	1.91%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.181e+00	1.0000	92.0	5.08%	2300.3	4.80%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.157e+00	1.0000	188.0	10.38%	4795.3	10.01%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.151e+00	1.0000	19.0	1.05%	441.4	0.92%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.118e+00	1.0000	177.0	9.77%	4520.1	9.44%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.108e+00	1.0000	464.0	25.61%	12037.9	25.14%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.096e+00	1.0000	48.0	2.65%	1184.7	2.47%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.088e+00	1.0000	41.0	2.26%	1007.0	2.10%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.085e+00	1.0000	715.0	39.46%	18655.3	38.96%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.084e+00	1.0000	265.0	14.62%	6829.0	14.26%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.083e+00	1.0000	426.0	23.51%	11050.6	23.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.083e+00	1.0000	103.0	5.68%	2606.1	5.44%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.061e+00	1.0000	290.0	16.00%	7492.0	15.64%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.032e+00	1.0000	238.0	13.13%	6141.5	12.82%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.006e+00	1.0000	369.0	20.36%	9587.1	20.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.003e+00	1.0000	24.0	1.32%	583.5	1.22%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.000e+00	1.0000	85.0	4.69%	2158.0	4.51%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.937e-01	1.0000	53.0	2.92%	1330.6	2.78%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.842e-01	1.0000	59.0	3.26%	1487.5	3.11%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.827e-01	1.0000	90.0	4.97%	2292.6	4.79%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.770e-01	1.0000	132.0	7.28%	3388.9	7.08%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.675e-01	1.0000	51.0	2.81%	1283.8	2.68%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.642e-01	1.0000	126.0	6.95%	3235.8	6.76%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-9.624e-01	1.0000	685.0	37.80%	17928.6	37.44%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.479e-01	1.0000	26.0	1.43%	641.9	1.34%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-9.466e-01	1.0000	108.0	5.96%	2770.7	5.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.437e-01	1.0000	135.0	7.45%	3476.4	7.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.258e-01	1.0000	187.0	10.32%	4843.6	10.11%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.232e-01	1.0000	128.0	7.06%	3299.6	6.89%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.136e-01	1.0000	35.0	1.93%	878.5	1.83%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-9.090e-01	1.0000	408.0	22.52%	10657.8	22.26%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.949e-01	1.0000	65.0	3.59%	1661.2	3.47%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.897e-01	1.0000	235.0	12.97%	6116.9	12.77%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.870e-01	1.0000	281.0	15.51%	7326.9	15.30%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.561e-01	1.0000	270.0	14.90%	7050.2	14.72%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.470e-01	1.0000	445.0	24.56%	11663.7	24.36%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.322e-01	1.0000	398.0	21.96%	10432.2	21.78%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.294e-01	1.0000	97.0	5.35%	2514.9	5.25%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.181e-01	1.0000	79.0	4.36%	2045.4	4.27%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.157e-01	1.0000	20.0	1.10%	503.1	1.05%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.995e-01	1.0000	462.0	25.50%	12137.9	25.35%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.957e-01	1.0000	76.0	4.19%	1972.1	4.12%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.940e-01	1.0000	225.0	12.42%	5892.3	12.30%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.928e-01	1.0000	244.0	13.47%	6393.1	13.35%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.534e-01	1.0000	337.0	18.60%	8864.2	18.51%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.502e-01	1.0000	152.0	8.39%	3986.4	8.32%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.502e-01	1.0000	244.0	13.47%	6412.1	13.39%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.452e-01	1.0000	217.0	11.98%	5702.7	11.91%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.447e-01	1.0000	3.0	0.17%	68.6	0.14%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.261e-01	1.0000	304.0	16.78%	8007.8	16.72%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.189e-01	1.0000	20.0	1.10%	516.6	1.08%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.083e-01	1.0000	113.0	6.24%	2972.5	6.21%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.905e-01	1.0000	120.0	6.62%	3163.9	6.61%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.836e-01	1.0000	181.0	9.99%	4778.2	9.98%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.739e-01	1.0000	244.0	13.47%	6448.9	13.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.625e-01	1.0000	955.0	52.70%	25248.1	52.72%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.619e-01	1.0000	25.0	1.38%	657.8	1.37%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-6.479e-01	1.0000	101.0	5.57%	2675.2	5.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.244e-01	1.0000	760.0	41.94%	20123.9	42.02%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.965e-01	1.0000	89.0	4.91%	2374.2	4.96%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.859e-01	1.0000	88.0	4.86%	2351.1	4.91%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.830e-01	1.0000	460.0	25.39%	12218.4	25.51%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.752e-01	1.0000	499.0	27.54%	13256.7	27.68%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.730e-01	1.0000	13.0	0.72%	350.3	0.73%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.392e-01	1.0000	613.0	33.83%	16301.2	34.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.334e-01	1.0000	55.0	3.04%	1487.1	3.11%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.984e-01	1.0000	83.0	4.58%	2249.6	4.70%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.848e-01	1.0000	6.0	0.33%	169.4	0.35%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.763e-01	1.0000	111.0	6.13%	3008.8	6.28%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.667e-01	1.0000	174.0	9.60%	4697.9	9.81%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.657e-01	1.0000	144.0	7.95%	3896.3	8.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.648e-01	1.0000	203.0	11.20%	5472.0	11.43%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.549e-01	1.0000	945.0	52.15%	25155.0	52.53%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.312e-01	1.0000	442.0	24.39%	11857.4	24.76%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.305e-01	1.0000	495.0	27.32%	13265.4	27.70%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.287e-01	1.0000	291.0	16.06%	7842.6	16.38%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.169e-01	1.0000	75.0	4.14%	2066.3	4.31%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.100e-01	1.0000	291.0	16.06%	7856.6	16.41%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.100e-01	1.0000	160.0	8.83%	4355.8	9.10%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.075e-01	1.0000	44.0	2.43%	1229.8	2.57%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.043e-01	1.0000	19.0	1.05%	544.8	1.14%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.995e-01	1.0000	25.0	1.38%	711.2	1.49%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.823e-01	1.0000	19.0	1.05%	549.0	1.15%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.823e-01	1.0000	19.0	1.05%	549.0	1.15%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.806e-01	1.0000	9.0	0.50%	268.7	0.56%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.781e-01	1.0000	97.0	5.35%	2678.1	5.59%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.677e-01	1.0000	127.0	7.01%	3493.9	7.30%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.590e-01	1.0000	314.0	17.33%	8511.6	17.77%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.569e-01	1.0000	136.0	7.51%	3742.9	7.82%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.444e-01	1.0000	102.0	5.63%	2831.4	5.91%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.422e-01	1.0000	15.0	0.83%	446.0	0.93%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.381e-01	1.0000	301.0	16.61%	8182.2	17.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.354e-01	1.0000	102.0	5.63%	2836.2	5.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-3.314e-01	1.0000	136.0	7.51%	3758.8	7.85%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.302e-01	1.0000	83.0	4.58%	2323.7	4.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.270e-01	1.0000	80.0	4.42%	2243.9	4.69%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.123e-01	1.0000	424.0	23.40%	11491.1	24.00%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.107e-01	1.0000	61.0	3.37%	1732.1	3.62%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.082e-01	1.0000	84.0	4.64%	2362.4	4.93%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.028e-01	1.0000	35.0	1.93%	1018.7	2.13%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.979e-01	1.0000	244.0	13.47%	6691.6	13.97%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.979e-01	1.0000	367.0	20.25%	9985.5	20.85%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.923e-01	1.0000	258.0	14.24%	7072.6	14.77%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.866e-01	1.0000	490.0	27.04%	13279.7	27.73%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.784e-01	1.0000	375.0	20.70%	10220.6	21.34%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.771e-01	1.0000	131.0	7.23%	3660.3	7.64%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.741e-01	1.0000	539.0	29.75%	14599.7	30.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.717e-01	1.0000	74.0	4.08%	2110.0	4.41%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.700e-01	1.0000	11.0	0.61%	348.1	0.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.680e-01	1.0000	57.0	3.15%	1643.7	3.43%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.616e-01	1.0000	55.0	3.04%	1591.7	3.32%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.600e-01	1.0000	13.0	0.72%	409.6	0.86%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.595e-01	1.0000	52.0	2.87%	1509.8	3.15%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.593e-01	1.0000	12.0	0.66%	380.4	0.79%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.508e-01	1.0000	233.0	12.86%	6440.7	13.45%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.485e-01	1.0000	462.0	25.50%	12580.5	26.27%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.447e-01	1.0000	90.0	4.97%	2565.1	5.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.433e-01	1.0000	202.0	11.15%	5611.6	11.72%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.376e-01	1.0000	1385.0	76.43%	36968.4	77.20%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.360e-01	1.0000	6.0	0.33%	206.4	0.43%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.326e-01	1.0000	140.0	7.73%	3940.1	8.23%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.194e-01	1.0000	46.0	2.54%	1363.5	2.85%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.127e-01	1.0000	188.0	10.38%	5263.9	10.99%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.106e-01	1.0000	53.0	2.92%	1564.5	3.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.069e-01	1.0000	45.0	2.48%	1342.7	2.80%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.004e-01	1.0000	3.0	0.17%	117.5	0.25%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.970e-01	1.0000	80.0	4.42%	2324.5	4.85%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.961e-01	1.0000	51.0	2.81%	1517.5	3.17%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.874e-01	1.0000	19.0	1.05%	609.4	1.27%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.777e-01	1.0000	440.0	24.28%	12096.5	25.26%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.756e-01	1.0000	13.0	0.72%	436.6	0.91%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.734e-01	1.0000	211.0	11.64%	5933.1	12.39%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.635e-01	1.0000	6.0	0.33%	224.6	0.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.635e-01	1.0000	66.0	3.64%	1961.3	4.10%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.628e-01	1.0000	26.0	1.43%	825.0	1.72%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.625e-01	1.0000	612.0	33.77%	16717.3	34.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.617e-01	1.0000	213.0	11.75%	6003.4	12.54%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.587e-01	1.0000	624.0	34.44%	17044.4	35.59%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.575e-01	1.0000	274.0	15.12%	7663.3	16.00%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.536e-01	1.0000	273.0	15.07%	7642.0	15.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.512e-01	1.0000	21.0	1.16%	685.2	1.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.495e-01	1.0000	169.0	9.33%	4820.1	10.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.492e-01	1.0000	168.0	9.27%	4793.7	10.01%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.483e-01	1.0000	20.0	1.10%	657.2	1.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.364e-01	1.0000	342.0	18.87%	9536.8	19.91%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.295e-01	1.0000	242.0	13.36%	6841.1	14.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.260e-01	1.0000	799.0	44.09%	21766.3	45.45%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.236e-01	1.0000	33.0	1.82%	1054.3	2.20%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.208e-01	1.0000	40.0	2.21%	1259.4	2.63%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.188e-01	1.0000	27.0	1.49%	882.8	1.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.187e-01	1.0000	22.0	1.21%	734.9	1.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.118e-01	1.0000	145.0	8.00%	4215.7	8.80%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.105e-01	1.0000	73.0	4.03%	2210.4	4.62%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.029e-01	1.0000	598.0	33.00%	16482.3	34.42%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.019e-01	1.0000	291.0	16.06%	8227.1	17.18%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.766e-02	1.0000	147.0	8.11%	4294.5	8.97%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.572e-02	1.0000	274.0	15.12%	7779.6	16.24%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.530e-02	1.0000	454.0	25.06%	12646.6	26.41%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.450e-02	1.0000	110.0	6.07%	3271.9	6.83%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.184e-02	1.0000	215.0	11.87%	6177.9	12.90%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.769e-02	1.0000	71.0	3.92%	2183.6	4.56%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.339e-02	1.0000	300.0	16.56%	8517.0	17.78%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.313e-02	1.0000	43.0	2.37%	1384.6	2.89%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.967e-02	1.0000	36.0	1.99%	1184.0	2.47%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.883e-02	1.0000	23.0	1.27%	796.1	1.66%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.366e-02	1.0000	107.0	5.91%	3224.2	6.73%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.266e-02	1.0000	31.0	1.71%	1043.2	2.18%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.003e-02	1.0000	86.0	4.75%	2638.5	5.51%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.774e-02	1.0000	135.0	7.45%	4022.0	8.40%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.661e-02	1.0000	208.0	11.48%	6047.7	12.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.407e-02	1.0000	56.0	3.09%	1789.2	3.74%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.920e-02	1.0000	186.0	10.26%	5461.4	11.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.311e-02	1.0000	14.0	0.77%	543.3	1.13%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.300e-02	1.0000	16.0	0.88%	607.7	1.27%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.253e-02	1.0000	92.0	5.08%	2846.9	5.94%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.251e-02	1.0000	258.0	14.24%	7467.7	15.59%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.239e-02	1.0000	211.0	11.64%	6174.6	12.89%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.229e-02	1.0000	159.0	8.77%	4732.2	9.88%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-5.092e-02	1.0000	64.0	3.53%	2046.0	4.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.969e-02	1.0000	47.0	2.59%	1552.0	3.24%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.637e-02	1.0000	177.0	9.77%	5253.2	10.97%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.439e-02	1.0000	958.0	52.87%	26265.8	54.85%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.413e-02	1.0000	412.0	22.74%	11700.7	24.43%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.173e-02	1.0000	7.0	0.39%	322.7	0.67%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.170e-02	1.0000	31.0	1.71%	1089.8	2.28%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.959e-02	1.0000	58.0	3.20%	1898.0	3.96%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.870e-02	1.0000	263.0	14.51%	7663.2	16.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.807e-02	1.0000	95.0	5.24%	3010.1	6.29%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.714e-02	1.0000	55.0	3.04%	1847.2	3.86%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.596e-02	1.0000	302.0	16.67%	8810.7	18.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.356e-02	1.0000	100.0	5.52%	3175.6	6.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.546e-02	1.0000	9.0	0.50%	439.1	0.92%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.487e-02	1.0000	215.0	11.87%	6495.3	13.56%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.208e-02	1.0000	320.0	17.66%	9443.0	19.72%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-8.742e-03	1.0000	164.0	9.05%	5132.4	10.72%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.199e-03	1.0000	686.0	37.86%	19495.6	40.71%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.973e-03	1.0000	75.0	4.14%	2624.9	5.48%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.531e-03	1.0000	413.0	22.79%	12209.1	25.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.500e-03	1.0000	92.0	5.08%	3145.4	6.57%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.333e-03	1.0000	192.0	10.60%	6054.8	12.64%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.700e-03	1.0000	47.0	2.59%	1828.6	3.82%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.580e-04	1.0000	9.0	0.50%	598.5	1.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.670e-04	1.0000	139.0	7.67%	4789.0	10.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.700e-05	1.0000	397.0	21.91%	12436.5	25.97%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	75.2	0.16%