Information for 9-CCCTCATAAT (Motif 11)


Reverse Opposite:

p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.817
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif428.9
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets210.7 +/- 106.3bp
Average Position of motif in Background185.9 +/- 108.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCCTCATAAT----
GCAACCTCATTATNNNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCCTCATAAT----
NNNACCTCATTATCNTN

PB0176.1_Sox5_2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCTCATAAT------
-TATCATAATTAAGGA

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCTCATAAT----
AAAGCTCGTAAAATTT

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCTCATAAT----
AAACCTCGTAAAATTT

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCCTCATAAT-
TCGTACCCGCATCATT

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCCTCATAAT--
AAGCCCCCCAAAAAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCCTCATAAT
AASCACTCAA---

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCATAAT----
NANTATTATAATTNNN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCTCATAAT
AGCCACTCAAG--