Information for 13-GAGCATCCGRCA (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.637e+01
Information Content per bp:1.891
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets176.2 +/- 82.8bp
Average Position of motif in Background40.2 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0077.1_Spdef_1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGCATCCGRCA----
GTACATCCGGATTTTT

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCCGRCA
CGACCATCTGTT-

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCCGRCA--
CCNNACCATCTGGCCTN

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGCATCCGRCA-
-GCCAGCTGBTNB

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCCGRCA--
ATTGCCTCAGGCAAT

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGCATCCGRCA
-NRYTTCCGGY-

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCCGRCA
GTGCGCATGCGC--

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGCATCCGRCA
CGGAGC--------

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGCATCCGRCA
CAGCC-------

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAGCATCCGRCA
--ACATCCTGNT