Information for 5-CAGGCTGT (Motif 17)


Reverse Opposite:

p-value:1e-6
log p-value:-1.480e+01
Information Content per bp:1.952
Number of Target Sequences with motif237.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif1685.2
Percentage of Background Sequences with motif3.71%
Average Position of motif in Targets187.4 +/- 110.1bp
Average Position of motif in Background185.8 +/- 112.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CAGGCTGT-
---GCTGTG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAGGCTGT
TWGTCTGV

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGT----
NNTCCTGCTGTGNNN

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGT----
GVACAGNMTGTYCTB

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAGGCTGT----
AGNACAGNCTGTTCTN

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGT----
GNACANNNTGTTCTT

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCTGT----
AGNACANNNTGTNCTN

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAGGCTGT--
VAGRACAKWCTGTYC

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGGCTGT---
ACAGGATGTGGT

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCTGT----
TCNCCTGCTGNGNNN