Information for 13-TTTGCACTAA (Motif 18)


Reverse Opposite:

p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets161.7 +/- 100.0bp
Average Position of motif in Background235.6 +/- 94.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTTGCACTAA---
CAATTGCAAAAATAT

PB0096.1_Zfp187_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTTGCACTAA---
TTATGTACTAATAA

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTTGCACTAA-
--NCCACTTAN

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTGCACTAA
ATTTGCATAA-

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTTGCACTAA
ATTTTCCATT--

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TTTGCACTAA---
TACATGTGCACATAAAA

MA0507.1_POU2F2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TTTGCACTAA
TTCATTTGCATAT-

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTTGCACTAA---
CAGATGTGCACATACGT

MA0102.3_CEBPA/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTGCACTAA-
ATTGCACAATA

MA0466.1_CEBPB/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTTGCACTAA
TATTGCACAAT