Information for 15-TTCATTTCAAAG (Motif 19)


Reverse Opposite:

p-value:1e-6
log p-value:-1.402e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets101.4 +/- 37.5bp
Average Position of motif in Background260.4 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:TTCATTTCAAAG-
---ACATCAAAGG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTCATTTCAAAG-
---ACWTCAAAGG

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTCATTTCAAAG---
---ACATCAAAGGNA

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTCATTTCAAAG---
-AAAGATCAAAGGAA

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTCATTTCAAAG-----
TATAGATCAAAGGAAAA

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTCATTTCAAAG-----
TATAGATCAAAGGAAAA

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTCATTTCAAAG
ATTTGCATAACAAAG

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTCATTTCAAAG-----
NNNAGATCAAAGGANNN

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTCATTTCAAAG
-CGGTTTCAAA-

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTCATTTCAAAG
ATTTGCATAACAATG