Information for 6-CGGGGTCG (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.306e+01
Information Content per bp:1.804
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif3.94%
Number of Background Sequences with motif1247.8
Percentage of Background Sequences with motif2.75%
Average Position of motif in Targets197.6 +/- 109.1bp
Average Position of motif in Background193.6 +/- 108.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0025.1_Glis2_1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGGTCG---
NTNTGGGGGGTCNNNA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGGGTCG-----
CTCCAGGGGTCAATTGA

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGGGGTCG----
AGAGCGGGGTCAAGTA

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CGGGGTCG-----
NTNNNGGGGTCANGNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CGGGGTCG----
CGCGCCGGGTCACGTA

PB0010.1_Egr1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CGGGGTCG--
ANTGCGGGGGCGGN

PB0110.1_Bcl6b_2/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CGGGGTCG----
NNTNAGGGGCGGNNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CGGGGTCG-----
GGCGAGGGGTCAAGGGC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGGGGTCG
TGGGGA--

PB0100.1_Zfp740_1/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGGTCG---
NANNTGGGGGGGGNGN