Information for 18-GGAACAGCACCC (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.235e+01
Information Content per bp:1.892
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets173.8 +/- 101.4bp
Average Position of motif in Background194.9 +/- 104.0bp
Strand Bias (log2 ratio + to - strand density)5.0
Multiplicity (# of sites on avg that occur together)3.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
CCAGGAACAG-----

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.60
Offset:-11
Orientation:reverse strand
Alignment:-----------GGAACAGCACCC
TGGCCANNNNNGGAACTGCA---

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGAACAGCACCC
CGGAAGTGAAAC-

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAACAGCACCC
--CACAGN----

MA0152.1_NFATC2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGAACAGCACCC
TGGAAAA------

MA0081.1_SPIB/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
AGAGGAA--------

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAACAGCACCC-
GAGAACCGAAACTG

MA0111.1_Spz1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
AGGGTAACAGC----

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAACAGCACCC
NHAACBGYYV--

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAACAGCACCC--
GGAAANTGAAACTNA