Information for 9-CAAGGCTT (Motif 27)


Reverse Opposite:

p-value:1e-4
log p-value:-1.129e+01
Information Content per bp:1.939
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif3.11%
Number of Background Sequences with motif970.2
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets197.0 +/- 103.3bp
Average Position of motif in Background190.6 +/- 108.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAAGGCTT
CNAGGCCT

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAAGGCTT-
--AAGCTTG

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCTT
NTCAAGGTCA

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAAGGCTT
CTAGGCCT

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGGCTT--
NNGGCCACGCCTTTN

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAAGGCTT
ACAACAC--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCTT
BTCAAGGTCA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAAGGCTT-
-NGGGATTA

MA0146.2_Zfx/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGCTT-
GGGGCCGAGGCCTG

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGCTT--
AAGTTCAAGGTCAGC