Information for 20-TGAGATAGCCCT (Motif 28)


Reverse Opposite:

p-value:1e-4
log p-value:-9.748e+00
Information Content per bp:1.956
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets201.7 +/- 106.5bp
Average Position of motif in Background208.0 +/- 87.0bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)2.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0126.1_Gata5_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGAGATAGCCCT--
GACAGAGATATCAGTGT

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGAGATAGCCCT
-AAGATATCCTT

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGAGATAGCCCT
--AGATAASR--

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGAGATAGCCCT--
ANANNTGATACCCNATN

PH0162.1_Six2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGAGATAGCCCT--
ANANGTGATACCCCATT

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGAGATAGCCCT--
ANANGTGATACCCTATN

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGAGATAGCCCT--
ANNNATGATACCCCATC

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGAGATAGCCCT
-NAGATAAGNN-

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:TGAGATAGCCCT--
------AGGCCTNG

MA0036.2_GATA2/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGAGATAGCCCT--
NCAGATAAGAANNN