Information for 22-GACCTCATTTCC (Motif 29)


Reverse Opposite:

p-value:1e-4
log p-value:-9.748e+00
Information Content per bp:1.953
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets245.8 +/- 106.8bp
Average Position of motif in Background151.6 +/- 134.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0492.1_JUND_(var.2)/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GACCTCATTTCC
NATGACATCATCNNN

MA0488.1_JUN/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GACCTCATTTCC
ATGACATCATCNN-

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GACCTCATTTCC
TGACCTARTT---

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GACCTCATTTCC---
NNNACCTCATTATCNTN

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GACCTCATTTCC
NGATGACGTCAT----

PH0152.1_Pou6f1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GACCTCATTTCC---
GCAACCTCATTATNNNN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GACCTCATTTCC
NGATGACGTCAT----

PB0012.1_Elf3_1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GACCTCATTTCC-----
----TTACTTCCTNGTN

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GACCTCATTTCC-
-ACTACAATTCCC

MA0072.1_RORA_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GACCTCATTTCC
TTGACCTANTTATN