Information for 2-AATCACCATG (Motif 3)


Reverse Opposite:

p-value:1e-14
log p-value:-3.445e+01
Information Content per bp:1.651
Number of Target Sequences with motif680.0
Percentage of Target Sequences with motif14.88%
Number of Background Sequences with motif5002.3
Percentage of Background Sequences with motif11.03%
Average Position of motif in Targets194.1 +/- 108.8bp
Average Position of motif in Background190.4 +/- 109.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATCACCATG
CAAATCACTG--

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATCACCATG----
NNNNATGACCTTGANTN

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AATCACCATG
AAGGCGAAATCATCGCA

MA0141.2_Esrrb/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATCACCATG----
--TGACCTTGANNN

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AATCACCATG
TCCAATCCACA--

PH0015.1_Crx/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----AATCACCATG-
AGGCTAATCCCCAANG

PH0052.1_Hoxa5/Jaspar

Match Rank:7
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AATCACCATG
NTGAGCTAATTACCNT-

PH0049.1_Hoxa2/Jaspar

Match Rank:8
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AATCACCATG
NTGAGCTAATTACCNT-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AATCACCATG--
--TGACCTTGAV

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AATCACCATG-
-NTGACCTTGA