Information for 21-GAAGGCGTCA (Motif 30)


Reverse Opposite:

p-value:1e-3
log p-value:-8.206e+00
Information Content per bp:1.970
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets272.1 +/- 88.6bp
Average Position of motif in Background131.6 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAGGCGTCA-----
GGCGAGGGGTCAAGGGC

MA0018.2_CREB1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAAGGCGTCA
--TGACGTCA

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GAAGGCGTCA
--AGGTGTCA

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGCGTCA-----
NTNNNGGGGTCANGNNN

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGCGTCA-----
TNNNNGGTGTCATNTNT

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GAAGGCGTCA
----ACGTCA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAAGGCGTCA-----
CTCCAGGGGTCAATTGA

JunD(bZIP)/K562-JunD-ChIP-Seq/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCGTCA-
NGATGACGTCAT

PB0038.1_Jundm2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGCGTCA----
NCGATGACGTCATCGN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCGTCA-
NGATGACGTCAT