Information for 5-NAGTCCGCACGN (Motif 4)


Reverse Opposite:

p-value:1e-11
log p-value:-2.741e+01
Information Content per bp:1.445
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets253.7 +/- 81.4bp
Average Position of motif in Background127.2 +/- 44.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-NAGTCCGCACGN
TGAGTCAGCA---

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:NAGTCCGCACGN--
------GCACGTNC

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:NAGTCCGCACGN--
------GCACGTAY

PB0041.1_Mafb_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---NAGTCCGCACGN--
NCTANGTCAGCAAATTT

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-NAGTCCGCACGN---
NNTTTGCACACGGCCC

MA0131.1_HINFP/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--NAGTCCGCACGN
TAACGTCCGC----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-NAGTCCGCACGN
SSAATCCACANN-

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:NAGTCCGCACGN-
-----BGCACGTA

MA0117.1_Mafb/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:NAGTCCGCACGN
NCGTCAGC----

MA0479.1_FOXH1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--NAGTCCGCACGN
TCCAATCCACA---