Information for 6-AATCATCGAA (Motif 7)


Reverse Opposite:

p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.940
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets169.8 +/- 98.6bp
Average Position of motif in Background228.7 +/- 139.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------AATCATCGAA
AAGGCGAAATCATCGCA

MA0038.1_Gfi1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATCATCGAA
CAAATCACTG--

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AATCATCGAA
-GTCATN---

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATCATCGAA---
NANTTCATTGAATTA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATCATCGAA---
NNNATTCCTCGAAAGN

PB0197.1_Zfp105_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATCATCGAA----
NAAANTTATTGAANCAN

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AATCATCGAA-
CGACCCAATCAACGGTG

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AATCATCGAA
GYCATCMATCAT----

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AATCATCGAA------
NNNAGATCAAAGGANNN

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AATCATCGAA-----
ATAAACCGAAACCAA