Information for 8-ARAGAGAGAG (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.531
Number of Target Sequences with motif431.0
Percentage of Target Sequences with motif9.43%
Number of Background Sequences with motif3136.2
Percentage of Background Sequences with motif6.91%
Average Position of motif in Targets172.2 +/- 106.8bp
Average Position of motif in Background192.7 +/- 114.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0508.1_PRDM1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ARAGAGAGAG-
AGAAAGTGAAAGTGA

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ARAGAGAGAG
GAAAGTGAAAGT-

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ARAGAGAGAG
AGAGGAAGTG

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ARAGAGAGAG--
NNNACCGAGAGTNNN

POL002.1_INR/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ARAGAGAGAG
-NNNANTGA-

MA0498.1_Meis1/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----ARAGAGAGAG
NNNTGAGTGACAGCT

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ARAGAGAGAG----
GGAGAAAGGTGCGA

MA0474.1_Erg/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ARAGAGAGAG-
ACAGGAAGTGG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ARAGAGAGAG-
-TTGAGTGSTT

MA0080.3_Spi1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ARAGAGAGAG-
AAAAAGAGGAAGTGA