Information for 13-GGCCTCAAAGCG (Motif 10)


Reverse Opposite:

p-value:1e-18
log p-value:-4.273e+01
Information Content per bp:1.881
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets246.3 +/- 158.3bp
Average Position of motif in Background279.9 +/- 167.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGCCTCAAAGCG
-ACATCAAAGG-

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGCCTCAAAGCG-
AAAGATCAAAGGAA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGCCTCAAAGCG-
-ACATCAAAGGNA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGCCTCAAAGCG
-ACWTCAAAGG-

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGCCTCAAAGCG---
NNNAGATCAAAGGANNN

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCCTCAAAGCG---
TATAGATCAAAGGAAAA

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGCCTCAAAGCG---
NANAGATCAAAGGGNNN

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCCTCAAAGCG---
TATAGATCAAAGGAAAA

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCCTCAAAGCG
CGGTTTCAAA---

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGCCTCAAAGCG
CNAGGCCT-------