Information for 19-TCTTCACGTAMA (Motif 13)


Reverse Opposite:

p-value:1e-12
log p-value:-2.896e+01
Information Content per bp:1.809
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif55.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets265.5 +/- 144.5bp
Average Position of motif in Background243.5 +/- 160.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCTTCACGTAMA-
---GCACGTACCC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTTCACGTAMA
--BGCACGTA--

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCTTCACGTAMA
---GCACGTAY-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCTTCACGTAMA
---GCACGTNC-

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCTTCACGTAMA
GCTTCC------

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCTTCACGTAMA-
TACATGTGCACATAAAA

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCTTCACGTAMA----
AAACCTCGTAAAATTT

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCTTCACGTAMA----
AAAGCTCGTAAAATTT

SA0003.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.56
Offset:-10
Orientation:forward strand
Alignment:----------TCTTCACGTAMA
CCTTTACCCTTCTTCACCTT--

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCTTCACGTAMA-
CAGATGTGCACATACGT