Information for 6-GCACATTGTG (Motif 14)


Reverse Opposite:

p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.925
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif371.2
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets256.2 +/- 144.6bp
Average Position of motif in Background233.4 +/- 142.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCACATTGTG
-CTCATTGTC

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCACATTGTG----
TGTTCCCATTGTGTACT

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GCACATTGTG
---CTTTGT-

MA0007.2_AR/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCACATTGTG---
AAGAACAGAATGTTC

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCACATTGTG---
VAGRACAKWCTGTYC

MA0113.2_NR3C1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCACATTGTG----
AGNACATTNTGTTCT

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCACATTGTG----
NNNCCATTGTGTNAN

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCACATTGTG----
NAGAACAGNCTGTNCT

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCACATTGTG----
NAGNACANNNTGTNCT

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCACATTGTG---
VAGRACAKNCTGTBC