Information for 10-GCACATGTAT (Motif 15)


Reverse Opposite:

p-value:1e-11
log p-value:-2.634e+01
Information Content per bp:1.914
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif925.1
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets268.6 +/- 153.8bp
Average Position of motif in Background246.9 +/- 146.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GCACATGTAT
AAGCACATGG--

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
ANTNTTACATGTATNTA

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
ANTATTACATGTANNNN

PH0086.1_Irx5/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
ANTNNTACATGTANNTN

MA0147.2_Myc/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCACATGTAT
AAGCACATGG--

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
NNTATTACATGTANNNT

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
ANTTNTACATGTANTTN

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCACATGTAT---
NNTTTTACATGTANNNT

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GCACATGTAT--
NNTNCGCACCTGTNGAN

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCACATGTAT
GTCACGTGGM-