Information for 17-CACATCACAA (Motif 16)


Reverse Opposite:

p-value:1e-8
log p-value:-1.920e+01
Information Content per bp:1.943
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif209.7
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets250.7 +/- 140.6bp
Average Position of motif in Background240.7 +/- 144.7bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0511.1_RUNX2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CACATCACAA-----
CAAACCACAAACCCC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACATCACAA--
NWAACCACADNN

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CACATCACAA-
ATGTCACAACAACAC

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACATCACAA
NAAACCACAG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CACATCACAA---
---RNAACAATGG

PB0122.1_Foxk1_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACATCACAA-----
CAAACAACAACACCT

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CACATCACAA--
AACACCAAAACAAAGGA

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CACATCACAA-
-AAACCACAGC

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CACATCACAA-
-AAACCACANN

MA0133.1_BRCA1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CACATCACAA
-ACAACAC--