Information for 9-GGGAATTG (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.305e+01
Information Content per bp:1.934
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif778.9
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets236.5 +/- 137.1bp
Average Position of motif in Background248.1 +/- 144.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGGAATTG----
GGGAATTGTAGT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTG
NCTGGAATGC

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GGGAATTG
AAAGRGGAAGTG

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGGAATTG-------
-AAAATTGTTATGAA

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGGAATTG--
GGGAATTTCC

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTG
AGAGGAAGTG

PH0024.1_Dlx5/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTG------
GGGGTAATTAGCTCTG

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTG-------
GGAAAAATTGTTAGGAA

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTG
CCWGGAATGY

PB0058.1_Sfpi1_1/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGGAATTG-
TTAAGAGGAAGTTA