Information for 16-GAAAAAAG (Motif 24)


Reverse Opposite:

p-value:1e-4
log p-value:-1.122e+01
Information Content per bp:1.795
Number of Target Sequences with motif1648.0
Percentage of Target Sequences with motif48.05%
Number of Background Sequences with motif20811.1
Percentage of Background Sequences with motif44.46%
Average Position of motif in Targets250.7 +/- 134.0bp
Average Position of motif in Background246.6 +/- 141.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----GAAAAAAG-
TACTGGAAAAAAAA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAAAG-
GGAACAAAGR

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAAAAAAG-----
GTTAAAAAAAAAAATTA

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAAAAAAG-----
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GAAAAAAG-----
ATAAGAACAAAGGACTA

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAAAAAAG-
AAAACAAAGG

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GAAAAAAG
AAATAAGAAAAAAC

MA0152.1_NFATC2/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAAAAAAG
TGGAAAA---

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAAAAAAG----
GTTCAAAAAAAAAATTC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAAAAAAG
RACAAWGG