Information for 25-CCTAACCCTAAC (Motif 28)


Reverse Opposite:

p-value:1e-2
log p-value:-4.631e+00
Information Content per bp:1.985
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets302.7 +/- 79.8bp
Average Position of motif in Background404.5 +/- 118.0bp
Strand Bias (log2 ratio + to - strand density)5.2
Multiplicity (# of sites on avg that occur together)19.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTAACCCTAAC
GCTAATCC----

PH0025.1_Dmbx1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTAACCCTAAC--
NNNATTAATCCGNTTNA

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-YTAATCCY---

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTAACCCTAAC
NYTAATCCYB--

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTAACCCTAAC
--TAATCCCN--

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTAACCCTAAC--
NNTAATCCNGNCNN

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTAACCCTAAC----
-CAAACAACAACACCT

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-CTAATCCTCTT

MA0057.1_MZF1_5-13/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAACCCTAAC
-TTCCCCCTAC-

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCTAACCCTAAC
GGCCACACCCAN--