Information for 3-TCGTTGGAAACG (Motif 3)


Reverse Opposite:

p-value:1e-32
log p-value:-7.512e+01
Information Content per bp:1.913
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets277.3 +/- 131.0bp
Average Position of motif in Background271.7 +/- 133.6bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TCGTTGGAAACG
----TGGAAAA-

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCGTTGGAAACG
-CSTGGGAAAD-

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCGTTGGAAACG----
CTACTTGGATACGGAAT

MA0520.1_Stat6/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCGTTGGAAACG
ANTTCTCAGGAANNN

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TCGTTGGAAACG
--AATGGAAAAT

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTGGAAACG
TTCTNNAGAANT-

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTGGAAACG
TTCTNMGGAA---

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCGTTGGAAACG
TTCTTGGAAAN-

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCGTTGGAAACG-
---TTTGAAACCG

MA0144.2_STAT3/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TCGTTGGAAACG
CTTCTGGGAAA--