Information for 4-GATAGAGCAGTT (Motif 4)


Reverse Opposite:

p-value:1e-27
log p-value:-6.311e+01
Information Content per bp:1.599
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif19.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets236.3 +/- 138.0bp
Average Position of motif in Background256.5 +/- 110.8bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GATAGAGCAGTT------
-NNNNAGCAGCTGCTGAN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GATAGAGCAGTT--
----BRRCVGTTDN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GATAGAGCAGTT-
---ACAGCTGTTV

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GATAGAGCAGTT---
---NNAGCAGCTGCT

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GATAGAGCAGTT---
----NTGCAGCTGTG

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GATAGAGCAGTT
----CAGCC---

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GATAGAGCAGTT-
---NCAGCTGCTG

PB0047.1_Myf6_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GATAGAGCAGTT-----
-GAAGAACAGGTGTCCG

MA0501.1_NFE2::MAF/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GATAGAGCAGTT-
ATGACTCAGCAATTT

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GATAGAGCAGTT
----CAGCTGTT