Information for 6-CCACTTGCAGAT (Motif 6)


Reverse Opposite:

p-value:1e-24
log p-value:-5.637e+01
Information Content per bp:1.705
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif48.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets254.1 +/- 147.3bp
Average Position of motif in Background285.0 +/- 144.0bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACTTGCAGAT
--ATTTGCATAT

MA0507.1_POU2F2/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACTTGCAGAT---
--ATATGCAAATNNN

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGCAGAT-
ATAACCACTTGAAAATT

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCACTTGCAGAT
--ATTTGCATAA

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGCAGAT
TAAGCCACTTGAATTT

MA0464.1_Bhlhe40/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCACTTGCAGAT
CTCACGTGCAC--

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCACTTGCAGAT--
TNTAATTTGCATACNA

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCACTTGCAGAT-
CAATCACTGGCAGAAT

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACTTGCAGAT
TAAGCCACTTGAAATT

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCACTTGCAGAT----
-CAATTGCAAAAATAT