Information for 11-GAAACACTCTTT (Motif 9)


Reverse Opposite:

p-value:1e-22
log p-value:-5.067e+01
Information Content per bp:1.834
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif86.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets248.5 +/- 135.9bp
Average Position of motif in Background255.6 +/- 158.3bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.52
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0087.1_Sox5/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAAACACTCTTT
-NAACAAT----

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAAACACTCTTT
ACTGAAACCA-----

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAAACACTCTTT--
TNCNNAACAATTTTTNC

MA0157.1_FOXO3/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAAACACTCTTT
TGTAAACA------

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAAACACTCTTT
-AASCACTCAA-

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAAACACTCTTT
--AACAAT----

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAAACACTCTTT
GTAAACAG-----

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAAACACTCTTT
-AAGCACTTAA-

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAAACACTCTTT
ANANGTGATACCCTATN-

MA0084.1_SRY/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAAACACTCTTT
GTAAACAAT----