Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3430)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46800)	% of Background Sequences with Motif
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.015e+00	0.6448	885.0	25.80%	11105.7	23.73%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-5.775e+00	0.6448	1063.0	30.99%	13502.5	28.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.216e+00	0.6448	153.0	4.46%	1691.0	3.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.054e+00	0.6448	680.0	19.83%	8498.5	18.16%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.531e+00	0.6448	1375.0	40.09%	17862.5	38.16%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.404e+00	0.6448	613.0	17.87%	7686.6	16.42%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-4.363e+00	0.6448	774.0	22.57%	9823.4	20.99%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.170e+00	0.6448	1064.0	31.02%	13724.4	29.32%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.932e+00	0.6448	55.0	1.60%	558.9	1.19%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.832e+00	0.6448	258.0	7.52%	3106.4	6.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.765e+00	0.6448	585.0	17.06%	7391.7	15.79%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.654e+00	0.6448	175.0	5.10%	2057.9	4.40%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.600e+00	0.6448	422.0	12.30%	5262.0	11.24%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.434e+00	0.6448	1046.0	30.50%	13594.6	29.04%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.210e+00	0.7104	99.0	2.89%	1126.8	2.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.196e+00	0.7104	279.0	8.13%	3434.8	7.34%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.150e+00	0.7104	217.0	6.33%	2634.0	5.63%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.942e+00	0.7738	667.0	19.45%	8592.3	18.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.772e+00	0.8687	326.0	9.50%	4093.5	8.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.616e+00	0.9646	204.0	5.95%	2513.2	5.37%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.527e+00	1.0000	658.0	19.18%	8537.5	18.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.522e+00	1.0000	45.0	1.31%	491.9	1.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.501e+00	1.0000	9.0	0.26%	71.9	0.15%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.488e+00	1.0000	795.0	23.18%	10381.6	22.18%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.469e+00	1.0000	234.0	6.82%	2919.6	6.24%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.455e+00	1.0000	912.0	26.59%	11961.9	25.56%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.384e+00	1.0000	438.0	12.77%	5624.2	12.02%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.367e+00	1.0000	837.0	24.40%	10968.7	23.43%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.319e+00	1.0000	125.0	3.64%	1515.3	3.24%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.296e+00	1.0000	64.0	1.87%	738.9	1.58%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.296e+00	1.0000	64.0	1.87%	738.9	1.58%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.284e+00	1.0000	289.0	8.43%	3663.3	7.83%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.252e+00	1.0000	670.0	19.53%	8746.0	18.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.239e+00	1.0000	287.0	8.37%	3642.5	7.78%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.228e+00	1.0000	790.0	23.03%	10362.5	22.14%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.003e+00	1.0000	2274.0	66.30%	30605.7	65.39%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.934e+00	1.0000	46.0	1.34%	531.5	1.14%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.834e+00	1.0000	347.0	10.12%	4494.7	9.60%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.749e+00	1.0000	1461.0	42.59%	19560.7	41.79%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.715e+00	1.0000	1363.0	39.74%	18236.1	38.96%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.669e+00	1.0000	24.0	0.70%	268.6	0.57%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.635e+00	1.0000	1556.0	45.36%	20885.5	44.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.628e+00	1.0000	842.0	24.55%	11193.0	23.91%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.624e+00	1.0000	185.0	5.39%	2369.6	5.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.578e+00	1.0000	312.0	9.10%	4067.2	8.69%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.578e+00	1.0000	718.0	20.93%	9528.5	20.36%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.570e+00	1.0000	634.0	18.48%	8396.1	17.94%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.536e+00	1.0000	635.0	18.51%	8417.3	17.98%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.529e+00	1.0000	781.0	22.77%	10391.4	22.20%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.509e+00	1.0000	586.0	17.08%	7762.5	16.58%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.501e+00	1.0000	813.0	23.70%	10831.5	23.14%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.492e+00	1.0000	123.0	3.59%	1564.8	3.34%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.467e+00	1.0000	210.0	6.12%	2722.8	5.82%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.448e+00	1.0000	303.0	8.83%	3968.4	8.48%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.432e+00	1.0000	3.0	0.09%	23.8	0.05%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.428e+00	1.0000	1017.0	29.65%	13615.4	29.09%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.421e+00	1.0000	1478.0	43.09%	19885.4	42.48%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.407e+00	1.0000	57.0	1.66%	705.5	1.51%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.404e+00	1.0000	243.0	7.08%	3172.1	6.78%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.385e+00	1.0000	146.0	4.26%	1881.4	4.02%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.351e+00	1.0000	54.0	1.57%	670.9	1.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.347e+00	1.0000	184.0	5.36%	2392.2	5.11%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.344e+00	1.0000	205.0	5.98%	2673.1	5.71%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.331e+00	1.0000	448.0	13.06%	5940.8	12.69%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.310e+00	1.0000	31.0	0.90%	374.2	0.80%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.293e+00	1.0000	1590.0	46.36%	21452.3	45.83%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.224e+00	1.0000	192.0	5.60%	2517.1	5.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.201e+00	1.0000	746.0	21.75%	10003.6	21.37%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.156e+00	1.0000	61.0	1.78%	778.7	1.66%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.140e+00	1.0000	8.0	0.23%	88.0	0.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.121e+00	1.0000	187.0	5.45%	2466.3	5.27%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.103e+00	1.0000	196.0	5.71%	2591.0	5.54%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.100e+00	1.0000	586.0	17.08%	7862.7	16.80%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.088e+00	1.0000	67.0	1.95%	864.4	1.85%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.064e+00	1.0000	69.0	2.01%	893.8	1.91%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.026e+00	1.0000	19.0	0.55%	234.5	0.50%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.010e+00	1.0000	1489.0	43.41%	20175.8	43.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.009e+00	1.0000	220.0	6.41%	2930.3	6.26%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.960e-01	1.0000	2113.0	61.60%	28698.0	61.31%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.844e-01	1.0000	133.0	3.88%	1761.1	3.76%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.752e-01	1.0000	5.0	0.15%	55.1	0.12%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.752e-01	1.0000	5.0	0.15%	55.8	0.12%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.705e-01	1.0000	174.0	5.07%	2316.6	4.95%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.699e-01	1.0000	1344.0	39.18%	18214.6	38.91%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.640e-01	1.0000	238.0	6.94%	3182.6	6.80%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.257e-01	1.0000	125.0	3.64%	1662.5	3.55%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.061e-01	1.0000	20.0	0.58%	254.7	0.54%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-8.936e-01	1.0000	27.0	0.79%	348.6	0.74%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.890e-01	1.0000	112.0	3.27%	1492.7	3.19%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.702e-01	1.0000	1866.0	54.40%	25375.1	54.21%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.600e-01	1.0000	1045.0	30.47%	14183.7	30.30%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.349e-01	1.0000	795.0	23.18%	10787.8	23.05%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-8.295e-01	1.0000	356.0	10.38%	4814.6	10.29%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.281e-01	1.0000	247.0	7.20%	3333.1	7.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.885e-01	1.0000	2074.0	60.47%	28250.6	60.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.842e-01	1.0000	134.0	3.91%	1807.2	3.86%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.647e-01	1.0000	7.0	0.20%	88.0	0.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.588e-01	1.0000	603.0	17.58%	8199.0	17.52%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.540e-01	1.0000	6.0	0.17%	75.8	0.16%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.496e-01	1.0000	230.0	6.71%	3120.1	6.67%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.294e-01	1.0000	24.0	0.70%	320.7	0.69%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.231e-01	1.0000	53.0	1.55%	715.1	1.53%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-7.213e-01	1.0000	478.0	13.94%	6508.9	13.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.997e-01	1.0000	47.0	1.37%	636.4	1.36%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.995e-01	1.0000	468.0	13.64%	6379.4	13.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.993e-01	1.0000	886.0	25.83%	12082.6	25.81%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.979e-01	1.0000	31.0	0.90%	418.3	0.89%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.915e-01	1.0000	61.0	1.78%	828.1	1.77%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.911e-01	1.0000	47.0	1.37%	637.0	1.36%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.685e-01	1.0000	1418.0	41.34%	19356.5	41.35%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.676e-01	1.0000	172.0	5.01%	2349.0	5.02%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.644e-01	1.0000	776.0	22.62%	10596.2	22.64%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.613e-01	1.0000	1250.0	36.44%	17067.9	36.47%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.533e-01	1.0000	32.0	0.93%	436.0	0.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.306e-01	1.0000	236.0	6.88%	3232.1	6.91%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.291e-01	1.0000	2439.0	71.11%	33305.2	71.16%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-6.285e-01	1.0000	94.0	2.74%	1290.0	2.76%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.261e-01	1.0000	320.0	9.33%	4382.2	9.36%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.046e-01	1.0000	413.0	12.04%	5661.9	12.10%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.025e-01	1.0000	1810.0	52.77%	24740.0	52.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.798e-01	1.0000	206.0	6.01%	2835.0	6.06%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.709e-01	1.0000	225.0	6.56%	3099.0	6.62%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.696e-01	1.0000	76.0	2.22%	1052.2	2.25%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.521e-01	1.0000	290.0	8.45%	3995.4	8.54%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.502e-01	1.0000	651.0	18.98%	8939.8	19.10%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.487e-01	1.0000	628.0	18.31%	8625.8	18.43%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.451e-01	1.0000	96.0	2.80%	1332.2	2.85%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.387e-01	1.0000	78.0	2.27%	1085.8	2.32%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.381e-01	1.0000	525.0	15.31%	7220.6	15.43%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-5.267e-01	1.0000	1478.0	43.09%	20253.7	43.27%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.238e-01	1.0000	539.0	15.71%	7418.7	15.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.189e-01	1.0000	401.0	11.69%	5529.3	11.81%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.144e-01	1.0000	1738.0	50.67%	23809.6	50.87%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-5.109e-01	1.0000	588.0	17.14%	8095.3	17.30%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.947e-01	1.0000	269.0	7.84%	3726.6	7.96%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.825e-01	1.0000	108.0	3.15%	1511.7	3.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.783e-01	1.0000	1056.0	30.79%	14517.0	31.02%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.767e-01	1.0000	133.0	3.88%	1858.9	3.97%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.585e-01	1.0000	975.0	28.43%	13421.6	28.67%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.305e-01	1.0000	30.0	0.87%	434.8	0.93%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.192e-01	1.0000	89.0	2.59%	1262.5	2.70%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-4.067e-01	1.0000	272.0	7.93%	3800.1	8.12%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.921e-01	1.0000	463.0	13.50%	6438.2	13.75%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.913e-01	1.0000	70.0	2.04%	1003.1	2.14%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.842e-01	1.0000	1227.0	35.77%	16918.9	36.15%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.842e-01	1.0000	166.0	4.84%	2342.0	5.00%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.787e-01	1.0000	291.0	8.48%	4074.1	8.70%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.730e-01	1.0000	681.0	19.85%	9445.5	20.18%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.685e-01	1.0000	818.0	23.85%	11328.4	24.20%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-3.562e-01	1.0000	172.0	5.01%	2435.2	5.20%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.523e-01	1.0000	176.0	5.13%	2492.3	5.32%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.482e-01	1.0000	634.0	18.48%	8815.4	18.83%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.033e-01	1.0000	1006.0	29.33%	13955.4	29.82%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.010e-01	1.0000	859.0	25.04%	11940.5	25.51%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.002e-01	1.0000	548.0	15.98%	7663.5	16.37%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.949e-01	1.0000	751.0	21.90%	10461.7	22.35%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.946e-01	1.0000	115.0	3.35%	1661.6	3.55%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.918e-01	1.0000	333.0	9.71%	4698.7	10.04%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.876e-01	1.0000	130.0	3.79%	1874.5	4.00%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.834e-01	1.0000	481.0	14.02%	6750.1	14.42%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.769e-01	1.0000	100.0	2.92%	1456.4	3.11%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.764e-01	1.0000	192.0	5.60%	2746.7	5.87%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.755e-01	1.0000	2028.0	59.13%	27943.2	59.70%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.679e-01	1.0000	567.0	16.53%	7949.0	16.98%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.675e-01	1.0000	391.0	11.40%	5516.5	11.79%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.670e-01	1.0000	765.0	22.30%	10676.6	22.81%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.620e-01	1.0000	173.0	5.04%	2487.5	5.31%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.560e-01	1.0000	1762.0	51.37%	24338.6	52.00%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.393e-01	1.0000	199.0	5.80%	2862.1	6.11%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.387e-01	1.0000	171.0	4.99%	2470.2	5.28%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.378e-01	1.0000	159.0	4.64%	2302.4	4.92%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.356e-01	1.0000	525.0	15.31%	7393.8	15.80%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.356e-01	1.0000	100.0	2.92%	1471.8	3.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.351e-01	1.0000	808.0	23.56%	11296.5	24.13%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.348e-01	1.0000	1211.0	35.31%	16829.6	35.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.341e-01	1.0000	479.0	13.97%	6758.7	14.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.289e-01	1.0000	35.0	1.02%	542.7	1.16%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.254e-01	1.0000	415.0	12.10%	5878.8	12.56%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.209e-01	1.0000	35.0	1.02%	544.8	1.16%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.209e-01	1.0000	615.0	17.93%	8650.0	18.48%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.183e-01	1.0000	346.0	10.09%	4925.1	10.52%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.091e-01	1.0000	481.0	14.02%	6806.0	14.54%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.090e-01	1.0000	725.0	21.14%	10179.0	21.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.087e-01	1.0000	1066.0	31.08%	14870.0	31.77%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.001e-01	1.0000	415.0	12.10%	5898.5	12.60%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.976e-01	1.0000	101.0	2.94%	1501.2	3.21%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.808e-01	1.0000	492.0	14.34%	6984.9	14.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.781e-01	1.0000	16.0	0.47%	271.7	0.58%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.769e-01	1.0000	482.0	14.05%	6849.2	14.63%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.659e-01	1.0000	1044.0	30.44%	14619.2	31.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.656e-01	1.0000	38.0	1.11%	604.7	1.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.649e-01	1.0000	14.0	0.41%	243.5	0.52%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.561e-01	1.0000	120.0	3.50%	1793.0	3.83%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.552e-01	1.0000	111.0	3.24%	1665.8	3.56%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.546e-01	1.0000	8.0	0.23%	150.8	0.32%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.536e-01	1.0000	55.0	1.60%	858.0	1.83%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.532e-01	1.0000	400.0	11.66%	5732.9	12.25%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.525e-01	1.0000	1138.0	33.18%	15929.6	34.03%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.512e-01	1.0000	55.0	1.60%	859.3	1.84%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.507e-01	1.0000	71.0	2.07%	1092.8	2.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.381e-01	1.0000	519.0	15.13%	7405.5	15.82%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.377e-01	1.0000	503.0	14.66%	7184.0	15.35%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.362e-01	1.0000	7.0	0.20%	137.9	0.29%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.331e-01	1.0000	1694.0	49.39%	23570.1	50.36%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.277e-01	1.0000	173.0	5.04%	2567.1	5.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.236e-01	1.0000	274.0	7.99%	3998.3	8.54%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.208e-01	1.0000	774.0	22.57%	10963.4	23.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.203e-01	1.0000	269.0	7.84%	3931.9	8.40%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.200e-01	1.0000	94.0	2.74%	1442.8	3.08%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.144e-01	1.0000	29.0	0.85%	488.5	1.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.118e-01	1.0000	89.0	2.59%	1375.3	2.94%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.094e-01	1.0000	36.0	1.05%	596.8	1.27%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.069e-01	1.0000	879.0	25.63%	12437.1	26.57%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.052e-01	1.0000	583.0	17.00%	8340.6	17.82%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.049e-01	1.0000	1129.0	32.92%	15885.2	33.94%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.027e-01	1.0000	489.0	14.26%	7035.9	15.03%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.018e-01	1.0000	25.0	0.73%	432.0	0.92%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.921e-02	1.0000	37.0	1.08%	616.0	1.32%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.906e-02	1.0000	1445.0	42.13%	20232.4	43.23%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-9.721e-02	1.0000	2748.0	80.12%	37909.1	80.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.429e-02	1.0000	381.0	11.11%	5537.4	11.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.202e-02	1.0000	173.0	5.04%	2600.2	5.56%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.058e-02	1.0000	34.0	0.99%	576.0	1.23%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.710e-02	1.0000	617.0	17.99%	8844.1	18.90%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.306e-02	1.0000	38.0	1.11%	640.0	1.37%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.035e-02	1.0000	1248.0	36.38%	17574.8	37.55%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.913e-02	1.0000	74.0	2.16%	1180.9	2.52%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.759e-02	1.0000	2969.0	86.56%	40893.6	87.37%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.488e-02	1.0000	250.0	7.29%	3718.7	7.94%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.378e-02	1.0000	257.0	7.49%	3819.6	8.16%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.358e-02	1.0000	375.0	10.93%	5486.5	11.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.503e-02	1.0000	364.0	10.61%	5347.3	11.42%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-5.566e-02	1.0000	426.0	12.42%	6240.7	13.33%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.467e-02	1.0000	27.0	0.79%	489.4	1.05%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.425e-02	1.0000	251.0	7.32%	3767.8	8.05%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.226e-02	1.0000	115.0	3.35%	1811.5	3.87%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.220e-02	1.0000	935.0	27.26%	13341.4	28.50%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.192e-02	1.0000	412.0	12.01%	6053.0	12.93%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.858e-02	1.0000	60.0	1.75%	1001.2	2.14%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.665e-02	1.0000	119.0	3.47%	1878.7	4.01%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.644e-02	1.0000	177.0	5.16%	2721.9	5.82%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.335e-02	1.0000	1623.0	47.32%	22829.7	48.77%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.001e-02	1.0000	320.0	9.33%	4782.8	10.22%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.826e-02	1.0000	169.0	4.93%	2622.1	5.60%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.239e-02	1.0000	121.0	3.53%	1934.6	4.13%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.222e-02	1.0000	186.0	5.42%	2883.8	6.16%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.679e-02	1.0000	75.0	2.19%	1261.2	2.69%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.417e-02	1.0000	2119.0	61.78%	29673.1	63.40%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.371e-02	1.0000	1431.0	41.72%	20307.7	43.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.338e-02	1.0000	283.0	8.25%	4310.4	9.21%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.215e-02	1.0000	509.0	14.84%	7526.6	16.08%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.038e-02	1.0000	551.0	16.06%	8128.5	17.37%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.978e-02	1.0000	167.0	4.87%	2646.6	5.65%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.930e-02	1.0000	604.0	17.61%	8880.1	18.97%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.575e-02	1.0000	174.0	5.07%	2767.0	5.91%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.553e-02	1.0000	961.0	28.02%	13892.9	29.68%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.035e-02	1.0000	283.0	8.25%	4386.0	9.37%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.478e-03	1.0000	57.0	1.66%	1037.8	2.22%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.766e-03	1.0000	134.0	3.91%	2223.2	4.75%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.194e-03	1.0000	519.0	15.13%	7813.7	16.69%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.947e-03	1.0000	122.0	3.56%	2060.0	4.40%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.198e-03	1.0000	873.0	25.45%	12840.1	27.43%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.608e-03	1.0000	778.0	22.68%	11618.3	24.82%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.230e-04	1.0000	398.0	11.60%	6367.8	13.60%